PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT59282.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 337aa MW: 38512.3 Da PI: 10.4613

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT59282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.6	1.7e-19	105	154	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 +++kGVr+++ +g+W+AeIrd + ++r +lg+f+taeeAa a+++a+ +++ PHT59282.1 105 KKHKGVRQRR-WGKWAAEIRDtR---N-KTRLWLGTFDTAEEAALAYDKAAIEIR 154 589**998.******33...2.5********************9987 PP
2	AP2	61.6	1.8e-19	251	301	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++k +g+W+AeIrd k++r +lg+f+ta eAa a+++a+ +++g+ PHT59282.1 251 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 301 8***998.******33....36***********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MASKDKLKEN EAVTKPSEID KVEKFTNQVG ESSVVLPRVV RIYMPDSDAT DSSSDEKERP 60 QGEKSKRHEK TCIKEIIIEN GKTRVISKKT SKEKKDIKLL QENVKKHKGV RQRRWGKWAA 120 EIRDTRNKTR LWLGTFDTAE EAALAYDKAA IEIRALASKE ELQEKGVVKK TSNQVGQISS 180 ILPRLVRIDV PDHDTTDSSS DEEAKVEEKS EGQKRTSVKK IICENGKTKV ISKKMSKEEK 240 DLNLMQENEN KYRGVRRRKW GKWAAEIRDT RKKTRLWLGT FDTALEAALA YDKAAIEIRG 300 ANAMTNILKP PPKKFNPIKI NFIVPPLKRQ KADPLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11140.1	6e-17	ERF family protein