![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT58471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 46496.7 Da PI: 9.1132 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.1 | 1.2e-14 | 79 | 138 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g PHT58471.1 79 SRFRGVSRHRWTGRYEAHLWDkASWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 138 789******************877754655447*************************98 PP | |||||||
2 | AP2 | 42.8 | 1.3e-13 | 181 | 232 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ ++rW+A+I ++ +k+ +lg++ t ee a+a++ a + +g PHT58471.1 181 SKYRGVARHHHNNRWEARIGRVYG---NKYLYLGTYSTQEEVARAYDIAEIECRG 232 89****99***********99654...4*********************998877 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence |
MNTYTSVEWE RMSRGIRRSL CMVDYDIPVN NKCTKRRRKS PASAVIMNDD NYNNGQKLDS 60 KKGDQNNIIV QTPTVKRSSR FRGVSRHRWT GRYEAHLWDK ASWNVTQKKK GKQVYLGAYD 120 EEESAARAYD LAAIKYWGTS TFTNFPMSDY EKEIENMQNM TKEEHLASLR RSSSGFARGV 180 SKYRGVARHH HNNRWEARIG RVYGNKYLYL GTYSTQEEVA RAYDIAEIEC RGTNAMTNFD 240 MNTYMRWLKP DANSQMSFQD LTSENQPIQS NNSGDMINRI NDPSYSFNPS CFTTNAEKFY 300 AIPQSQEPIE RKMPFSSCKK SPSSTALSLL LRSSMFQELV EKNSSTDSEE SSVKNEAQSS 360 TENEFVFYTN DKKLPKLESL ENGTSSVLCD RSGQQQYFWS LMS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 8e-89 | AP2 family protein |