PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57662.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 572aa MW: 65283.5 Da PI: 9.8512

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.8	1.1e-12	26	74	4	56
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 GVr+ k +gr++AeIrdp +r k+++lg+f+ta++A +a+ + ++e+e PHT57662.1 26 VGVRRQK-NGRYAAEIRDP----IRhKKVWLGTFDTAQDASQAYLSKKSEFENE 74 59888.8*****7....357****************9998888875 PP
2	AP2	30	1.3e-09	92	139	2	52
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++ GV+ + k+g++ + Ir p ++ r++lg+f+ aeeA +a+ +++ PHT57662.1 92 RVVGVHKRNKQGKYNSAIRNP----ITeERIWLGSFDNAEEASQAYQSKKLE 139 799***************7....347***************9776665 PP
3	AP2	26.8	1.3e-08	216	262	3	54
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 + G+ + k +gr++A I d + + +++ g+f+t eeA +a+ + ++e PHT57662.1 216 FVGIKRQK-NGRYAAVITDrV-----KHKIWFGTFDTIEEASRAYLSKKFEFE 262 78998777.8*******55.....69***************98888876 PP
4	AP2	24.6	6.3e-08	309	354	5	54
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 G+r++k +gr++A I dp +r k + lg+f+t +eA +a+ + ++e PHT57662.1 309 GIRRRK-SGRYAAVITDP----IRhKEVCLGTFDTIDEASQAYKSKKSEFE 354 9999.7*****7....357****************88776665 PP
5	AP2	22	4.1e-07	403	440	5	45
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 G + k+ gr+ +eI +p + k+ +lg+fgtaeeA a PHT57662.1 403 GAYKSKTAGRYTSEIIHPI----TkKKTWLGTFGTAEEASHA 440 5578899********72....36************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MDTKLVVNVK QMKEPESSKA KMISLVGVRR QKNGRYAAEI RDPIRHKKVW LGTFDTAQDA 60 SQAYLSKKSE FENEKLSHQG NEKSKRIPET TRVVGVHKRN KQGKYNSAIR NPITEERIWL 120 GSFDNAEEAS QAYQSKKLEF NAMLQRCSTN KDGHSEQGNE NVNGEVFETD SCNGGTNRRI 180 DPREIGTTEE AKEGSKVFNS CLISNVRVNP KDKTTFVGIK RQKNGRYAAV ITDRVKHKIW 240 FGTFDTIEEA SRAYLSKKFE FEKLRQQGKT ENNLKKNCDQ IQHPESTSVL ETLNTATSCD 300 LKARRSLIGI RRRKSGRYAA VITDPIRHKE VCLGTFDTID EASQAYKSKK SEFEKLRQGN 360 KDNKRKKNCD QIQQPQVASL DTASEYGRAK RIDNHNTTPH MIGAYKSKTA GRYTSEIIHP 420 ITKKKTWLGT FGTAEEASHA FQSKKLEFQK LVKAKKQQCM QRKSEKLVNF KQGTAEETFH 480 VKQSKVFDLQ SSKEVELQSD MPTDSRARKN QEEQEDDGDL WKGKWVQLPD NTEVMFSSKL 540 GLPIIDNYGY LLGEFSTLDD LSICVTEDDN QM

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MDTKLVVNVK QMKEPESSKA KMISLVGVRR QKNGRYAAEI RDPIRHKKVW LGTFDTAQDA  60
SQAYLSKKSE FENEKLSHQG NEKSKRIPET TRVVGVHKRN KQGKYNSAIR NPITEERIWL  120
GSFDNAEEAS QAYQSKKLEF NAMLQRCSTN KDGHSEQGNE NVNGEVFETD SCNGGTNRRI  180
DPREIGTTEE AKEGSKVFNS CLISNVRVNP KDKTTFVGIK RQKNGRYAAV ITDRVKHKIW  240
FGTFDTIEEA SRAYLSKKFE FEKLRQQGKT ENNLKKNCDQ IQHPESTSVL ETLNTATSCD  300
LKARRSLIGI RRRKSGRYAA VITDPIRHKE VCLGTFDTID EASQAYKSKK SEFEKLRQGN  360
KDNKRKKNCD QIQQPQVASL DTASEYGRAK RIDNHNTTPH MIGAYKSKTA GRYTSEIIHP  420
ITKKKTWLGT FGTAEEASHA FQSKKLEFQK LVKAKKQQCM QRKSEKLVNF KQGTAEETFH  480
VKQSKVFDLQ SSKEVELQSD MPTDSRARKN QEEQEDDGDL WKGKWVQLPD NTEVMFSSKL  540
GLPIIDNYGY LLGEFSTLDD LSICVTEDDN QM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03800.1	5e-13	ERF family protein