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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT57639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 709aa MW: 79660 Da PI: 8.3415 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.3 | 7e-12 | 33 | 80 | 5 | 56 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 G+r+ k +gr++A+I dp +r k+++lg+f+t eeA +a+ a + ++++e PHT57639.1 33 GIRRQK-SGRYAARITDP----IRhKKVWLGTFDTIEEASQAYFAKKSEFHNE 80 999888.8*********7....357********************99999986 PP | |||||||
2 | AP2 | 25.7 | 2.8e-08 | 220 | 264 | 7 | 54 |
AP2 7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 ++++k+gr+ A+I dp ++++lg+f+t eeA +a+ + ++e PHT57639.1 220 TRREKSGRYSARITDP-----ImhTKVHLGTFDTIEEASQAYLSKKSEFE 264 467779*********8.....457******************88776665 PP | |||||||
3 | AP2 | 32.1 | 3e-10 | 309 | 355 | 4 | 54 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 G+r++k +gr++AeI dp + ++++lg+f t eeA +a+ + ++e PHT57639.1 309 VGIRRRK-NGRYFAEITDPI----KhQKVYLGTFNTIEEASQAYLSKKSEFE 355 59**999.8*********72....46******************88776665 PP | |||||||
4 | AP2 | 30.2 | 1.1e-09 | 399 | 441 | 4 | 50 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 G+r++k +gr++AeI dp + ++++lg+f+t e+A +a+ + PHT57639.1 399 VGIRRRK-NGRYFAEITDPI----KhQKVYLGTFDTIEQASQACLSKK 441 69**999.8*********72....46**********888888876555 PP | |||||||
5 | AP2 | 28.9 | 2.8e-09 | 491 | 535 | 5 | 52 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 GV k+ gr+ +eI p + k+++lg+f+taeeA a+ +++ PHT57639.1 491 GVNKSKTIGRYTSEITNPI----TkKKIWLGTFDTAEEASHAYQSKKLE 535 9*************99972....36*****************9776665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence |
MDNKEDFNCN KLVVNIEQGI EVESCNDKLS LIGIRRQKSG RYAARITDPI RHKKVWLGTF 60 DTIEEASQAY FAKKSEFHNE KLSHQGSKKG KRIHETLRFG GVHKKKKRGK YYYESTSPIS 120 KKRVWLGTFG AAGEGSWVDH HSKKLEFEQD GKLEVDVSIS NADNVGIDRK IDCHEIGTAV 180 EASRVFDSCL MANVRGAESS DECNVPRNGD PKDKISLVGT RREKSGRYSA RITDPIMHTK 240 VHLGTFDTIE EASQAYLSKK SEFEKLRKGN KVNKPKKNCD RIQQPESPSV VETVNTAASC 300 DPKAMRSLVG IRRRKNGRYF AEITDPIKHQ KVYLGTFNTI EEASQAYLSK KSEFEKLRQG 360 NKDNKPKKNC DQIQQPESTS VLETLNTATS CDPKDKSLVG IRRRKNGRYF AEITDPIKHQ 420 KVYLGTFDTI EQASQACLSK KSEFEKLRQG NKDNKTEPEP PSVVASLDTA VSANGRDKRI 480 GSRKRKAHTV GVNKSKTIGR YTSEITNPIT KKKIWLGTFD TAEEASHAYQ SKKLEFQNLV 540 KAKQQQCTKT QTHSEQDAEK EKSVNVEQGH ENVNCEPFQP ESSVGSPDVD VLLSNASSGE 600 TVQSTDSDKI GNTEEAFHVY QSKKLDDSES PQKVELQSNT QTDSSAGEKQ EGQEDDEDLW 660 MGEWMQLPGN RAVKFSLKLG LPIIDNYGYL LGEFSSLDDL SICETEDDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 483 | 513 | RKRKAHTVGVNKSKTIGRYTSEITNPITKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.1 | 2e-13 | ERF family protein |