PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT57040.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 513aa MW: 57716.6 Da PI: 8.3055

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT57040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.6e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT57040.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*****************......55**********************997 PP
2	AP2	43.9	5.9e-14	248	298	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAaka+++a+ k +g PHT57040.1 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAAKAYDKAAIKCNG 298 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MWDLNDSPDR RRPDFDESEE AYSSQVHRVG SFSNSSSSAV ATDDVSEEEV GVRSGKKKRS 60 TKPSKIFGFS VLGPDDEEEE KPVTRQFFPV DEPETGCVTN DSPNFPRAHW VGVKFYQNEP 120 LVNTGLAKPI DMAKQQQQQQ PPPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYESD LKQMTNLTKE EFVHVLRRQS 240 TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAAKAYD KAAIKCNGKE 300 AVTNFEPSIY ENELNSIESS NYAADHNLDL SLGGSSSNQG IRELGDNRGG QNHSSMQFDI 360 DWRRNGLRPE KQSALIDARR RDSGYNEAET LQLLSQTHLH SPVSLKHNNN NSNQVQRFGQ 420 FMRPGDQSHM IQMFPPQFGS SNYQIQYPSG SNGGTNVGDL SLSTSHGSSQ WKSNFPPQIF 480 AAAAASSGFP QQIPRPQNWS SENGFHHSLM RPS

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MWDLNDSPDR RRPDFDESEE AYSSQVHRVG SFSNSSSSAV ATDDVSEEEV GVRSGKKKRS  60
TKPSKIFGFS VLGPDDEEEE KPVTRQFFPV DEPETGCVTN DSPNFPRAHW VGVKFYQNEP  120
LVNTGLAKPI DMAKQQQQQQ PPPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYESD LKQMTNLTKE EFVHVLRRQS  240
TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAAKAYD KAAIKCNGKE  300
AVTNFEPSIY ENELNSIESS NYAADHNLDL SLGGSSSNQG IRELGDNRGG QNHSSMQFDI  360
DWRRNGLRPE KQSALIDARR RDSGYNEAET LQLLSQTHLH SPVSLKHNNN NSNQVQRFGQ  420
FMRPGDQSHM IQMFPPQFGS SNYQIQYPSG SNGGTNVGDL SLSTSHGSSQ WKSNFPPQIF  480
AAAAASSGFP QQIPRPQNWS SENGFHHSLM RPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-115	AP2 family protein