PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56852.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 640aa MW: 71393.7 Da PI: 7.0409

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.2	7.5e-12	315	371	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g PHT56852.1 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARAYDLAALKYWG 371 78*****************87776664446655.7799************98 PP
2	AP2	45.7	1.6e-14	416	465	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PHT56852.1 416 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 465 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MKSLSNDDSS NNNNHWLGFS LSPHINSLEG PLADQHHNTQ PGSSDVQSSV PIRFSPTHLN 60 YPGMFFESDN AGLYSSLSAM PLKSDGSLCI MKGFNRSQQP QGMVSSTPKL EDFFGDAAMG 120 PHHYEGCNRG GMAHSLHNIY YNQHQENETT NSQDFLNHIQ ENTRQQQQQQ QHYPDFSAFR 180 GHELYQSTEQ GKAECSNLQV PTMTNEEMSG MNNWVSRNYQ NPTGHALEQN MIGCMADNGA 240 ETASVGAMTY GDFKSLSLSM SPGSQSSCIT GTQQISPAVT ECIAMETKKR GPEKVNHQKQ 300 IVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG GYDMEDKAAR 360 AYDLAALKYW GPSTHINFPL ENYQQELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT 420 RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGVNAVT NFDISRYDVE 480 RIMASNTLLA GELARRNKDT ETSKEICNQN LIANASHHGE VNIQNKEENG NAVDWTMTLY 540 QSSSAGVDTN TMNSTPLQGQ MDESARMNTH LSNASSQVTS LGSSREVSPT KNNGHSMHNF 600 AMMPQSAPNL IPTPATNITS WISSAQLRPN VPVFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MKSLSNDDSS NNNNHWLGFS LSPHINSLEG PLADQHHNTQ PGSSDVQSSV PIRFSPTHLN  60
YPGMFFESDN AGLYSSLSAM PLKSDGSLCI MKGFNRSQQP QGMVSSTPKL EDFFGDAAMG  120
PHHYEGCNRG GMAHSLHNIY YNQHQENETT NSQDFLNHIQ ENTRQQQQQQ QHYPDFSAFR  180
GHELYQSTEQ GKAECSNLQV PTMTNEEMSG MNNWVSRNYQ NPTGHALEQN MIGCMADNGA  240
ETASVGAMTY GDFKSLSLSM SPGSQSSCIT GTQQISPAVT ECIAMETKKR GPEKVNHQKQ  300
IVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG GYDMEDKAAR  360
AYDLAALKYW GPSTHINFPL ENYQQELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT  420
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGVNAVT NFDISRYDVE  480
RIMASNTLLA GELARRNKDT ETSKEICNQN LIANASHHGE VNIQNKEENG NAVDWTMTLY  540
QSSSAGVDTN TMNSTPLQGQ MDESARMNTH LSNASSQVTS LGSSREVSPT KNNGHSMHNF  600
AMMPQSAPNL IPTPATNITS WISSAQLRPN VPVFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-144	AP2 family protein