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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT55823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28655.3 Da PI: 9.8599 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.5e-30 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRr g lKKA+ELSvLCdaeva+i+fss+g+lyey+ PHT55823.1 25 KRIENTTNRQVTFCKRRSGFLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 112.5 | 4.1e-37 | 93 | 189 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s +ea+a+++qqe++kL+++i nLq+++R+++Ge L L+++eL++Leq++ek+++k+RskKne+l+++ie++qk+e +l+++n++Lr+k++e PHT55823.1 93 SNTGSISEANAQYYQQESSKLRAQIGNLQNQNRNYMGEALAALNHRELRNLEQKIEKGISKVRSKKNEMLFAEIEYMQKREVDLHNNNQYLRAKIAE 189 3444599***************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RSGFLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVKA TIERYKKACT DSSNTGSISE ANAQYYQQES SKLRAQIGNL 120 QNQNRNYMGE ALAALNHREL RNLEQKIEKG ISKVRSKKNE MLFAEIEYMQ KREVDLHNNN 180 QYLRAKIAET ERAQQHQQQM NLMPGSSSSY ELVPPPQQFD TRNYLQVNGL QTNNHYPRQD 240 QPPLQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-121 | MIKC_MADS family protein |