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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT55130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 499aa MW: 56767.5 Da PI: 7.6227 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 157 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT55130.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206 78*******************......55************************997 PP | |||||||
2 | AP2 | 44.4 | 4.1e-14 | 249 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t++eAa+a+++a+ k +g PHT55130.1 249 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAIKCNG 299 89********.7******...5...334336**********************99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence |
MWNLNNSPDH RRDDGSEEGK GVGSVSNSSS SAVEELYGSE EEDNDQAEEN GEIKGKKKRS 60 TPSKIFGFSM TAPTNNDNLS SENVAPVTRQ FFPVDESENN GTENFEGDDR SCIFPRAHWA 120 GVKFYQPEPS GVYQLSQQQL PVQPMKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLEDYEE DLKQMKNLTK EEFVHVLRRQ 240 STGFPRGSSK YRGVTLHKCG RWEARMGQLL GKKYVYLGLF DTENEAARAY DKAAIKCNGK 300 DAVTNFDPSI YENELYSTES TNKAADHSLD LSLGSSSSKQ SRRETEHTYK DQNSSSMQFN 360 VDWPHQGSRH KQPSPIDMDG RRRNVYNETE TLQLLSQTHL HSPGSFKPNS HEMQRFGQYM 420 RAGDSQMFPP QFTSSNYQVQ FPSSSNRRDQ WQINNVLPPH PTSTICNCCS IIRIPSADIK 480 TSKLVSEEWL PYSLTRPSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 1e-109 | AP2 family protein |