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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT53989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 748aa MW: 83248.9 Da PI: 9.8785 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.1e-11 | 117 | 162 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++GVr +k +g +vAe +dp + +r++lg+f t eeA +a+ a ++ PHT53989.1 117 FSGVRKRK-QGEYVAEKWDPI----TkRRVWLGTFNTVEEATEAYLAKQRE 162 89***999.9******99962....35******************998776 PP | |||||||
2 | AP2 | 34.1 | 7e-11 | 288 | 327 | 4 | 47 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 GVr k +gr+ AeIrdp +r k+++lg+f+t eeA +a+ PHT53989.1 288 LGVRKQK-NGRYGAEIRDP----IRhKNVWLGTFDTVEEASQACL 327 69**888.8*********7....357**************99975 PP | |||||||
3 | AP2 | 26.5 | 1.6e-08 | 572 | 617 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 ++ GV+ +k +g++ +eI p ++ k+++lg+f t eeA k + ++ PHT53989.1 572 RIVGVHKNK-WGKYTSEIINP----ISkKKIWLGTFSTYEEASKTYQSKKL 617 789***999.*******9996....246***************98866665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence |
MEPERAIAIE NVEENHCPVY AHHMFDKMPS SNSTYRSVAV GERSYNTVLG LQHLQHTANP 60 ITKKRVLFGT AEVASEGSFD CAHHVLDEMT SSNSTNKTAA AEISDSAVLN LKYLTNFSGV 120 RKRKQGEYVA EKWDPITKRR VWLGTFNTVE EATEAYLAKQ REFANAHHMF DDMPSSNSIN 180 KTAARSAAAE SANAVERDRA DHGRTLFIKE VSFRDKTPSL GAELHSMGKL RKKDPFKKKK 240 VCKNFNSNIH ESKKPINVMN QGKEPVNCVE SDRCNTVRRN RKAKTGLLGV RKQKNGRYGA 300 EIRDPIRHKN VWLGTFDTVE EASQACLSKK AEFDMLSRGK KKNKPKNYDQ TLPESSAGAS 360 LFVANGQTLH AANVGRNKEN KPKNCDQIQP GSSVGASLFV ANYQTLHAAN VGRNKENEPK 420 NCDQIQPESS VGASLFVAND QTLHAANVDR NKEDEPKNCD QIQPELSVGA LLFVANDQTL 480 HAANVGRNKE NKPKNCDQIQ PGSSVGASLF VANDQTLLAA NVGRNKVNKP KNCGLTQPGL 540 SVRVSLSMAN DQTLNAANVS RNEKMDSPKT TRIVGVHKNK WGKYTSEIIN PISKKKIWLG 600 TFSTYEEASK TYQSKKLEFK KLVKPKKCNK KIHSTSKEKQ VGKEKFGNVK SGHVNYERFQ 660 PESAVKFNIL RSKEAELQSK MPVDLSTEEK QGGQEDADMW TGQWVKLPNG KEVNFSLKLG 720 LPIIDSYGSL LGEFSSLDDL RIYDESIY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.1 | 3e-13 | ERF family protein |