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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT50821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27295.2 Da PI: 5.1228 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va++ifsstgkl+e++s PHT50821.1 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALVIFSSTGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 49.1 | 2.4e-17 | 95 | 171 | 23 | 99 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +L k++ re+R+l Ge+Le Lsl+eLqq+e++Le + +++ + K ++++i++lq+k el eenk+L++k+e PHT50821.1 95 RLSKQVADKTRELRQLRGEELEGLSLEELQQIEKKLEAGFSRVLEIKGTRIMDEISNLQRKGAELMEENKQLKQKME 171 78888888899***************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVALVIFSS TGKLFEFASS 60 SMNDILGKYK LQTSSHEKVD QPSLDLQLEN SLNMRLSKQV ADKTRELRQL RGEELEGLSL 120 EELQQIEKKL EAGFSRVLEI KGTRIMDEIS NLQRKGAELM EENKQLKQKM EMMREGKLPL 180 LTDMDCMVME EGQSSDSIIT TNNVCSSNSG PPPEDDSSNA SLKLGCNNGP AVEDDCSITS 240 LKLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-70 | MIKC_MADS family protein |