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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT50083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23147.9 Da PI: 6.9362 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.2 | 3e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + PHT50083.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 59.1 | 1.8e-20 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ e++ + ++e++ Lk+ei+ Lq+ + + G + ++++l eL++Le+ Le + +iRs K+++++++i+ l++ke l+ +nk L+ k++e PHT50083.1 82 DAMEKQPQDPKEEINMLKNEIDILQKGLSYMYGGGAGTMTLDELHSLEKYLEIWMYHIRSAKMDIMFQEIQLLKNKEGILEAANKFLQDKIDE 174 4678899999********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GSMQGLIERY LKSTKGTEVA EDAMEKQPQD PKEEINMLKN EIDILQKGLS YMYGGGAGTM 120 TLDELHSLEK YLEIWMYHIR SAKMDIMFQE IQLLKNKEGI LEAANKFLQD KIDEQYTLTN 180 MTQTLTDIQC QLTVQNEIFQ F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 5e-80 | MIKC_MADS family protein |