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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT48427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 513aa MW: 57008.6 Da PI: 6.5076 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.5 | 8.9e-10 | 233 | 289 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+ ++ a++k++g PHT48427.1 233 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 289 57*******************88885555446666.7799999*************98 PP | |||||||
2 | AP2 | 50.2 | 6.6e-16 | 332 | 383 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PHT48427.1 332 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 383 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence |
MAPESNANWL SFSLSSMEML NNSSSSVHHE SSMLQSNDPS SSAADNHQYY FADNLFPHGW 60 MNPKSHQVMY SENEKQFFHQ GLFLDNNPQI IQHHQQPPPK LEDFFGGESD TSPTQDSSSL 120 THIYHHHNHG GTMATCDGGY FNNGQQDVNV TTAVAVVGGF QSFPTNSDSE VDDPQVMGTE 180 SSNELGYTAS INGGLSLGVN NTNCTNSLDT AIVTAVDSES CKKITDTFGQ RTSIYRGVTR 240 HRWTGRYEAH LWDNSCKREG QARKGRQGGY DKEDKAARSY DLAALKYWGA TATTNFPASN 300 YTKEIEEMKH MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY 360 LGTFATEEEA AEAYDIAAIK FRGLNAVTNF EMNRYDVEAI MKSSLPIGGA AKRLKISLES 420 EQKPSLNDNY QQTPHNNVNN NHSINFGAIS PVSAIPCGLP GLPFDTNQPF YHQSFFPHLQ 480 YSRNDVGASD HTSGTMPLLP SPAEIFIWPH QSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-142 | AP2 family protein |