![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT48009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20700.8 Da PI: 10.086 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.1 | 3.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLC+a+va+iifs++gklye++s PHT48009.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAQVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 88.5 | 1.3e-29 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 l+++++++++qe+ kLk+++e Lq++qRh+lGedL++L+ k+L+ Le+qL++sl++iRsk+++ +l+q+ +lq+ke++l e+n++L+ kl+ PHT48009.1 82 LSSKDSQNSYQEFIKLKARVEVLQQSQRHILGEDLGQLNKKDLELLERQLDSSLRQIRSKRTQNMLDQLTDLQQKEQSLLEINRSLKLKLQ 172 678999********************************************************************************99975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AQVALIIFSN RGKLYEFCST 60 SSMSEILERY HRCSYGDLAA GLSSKDSQNS YQEFIKLKAR VEVLQQSQRH ILGEDLGQLN 120 KKDLELLERQ LDSSLRQIRS KRTQNMLDQL TDLQQKEQSL LEINRSLKLK LQVQSGPIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15800.1 | 3e-83 | MIKC_MADS family protein |