PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT48009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20700.8 Da    PI: 10.086
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT48009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.7e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLC+a+va+iifs++gklye++s
  PHT48009.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAQVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP

2K-box88.51.3e-2982172999
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 l+++++++++qe+ kLk+++e Lq++qRh+lGedL++L+ k+L+ Le+qL++sl++iRsk+++ +l+q+ +lq+ke++l e+n++L+ kl+
  PHT48009.1  82 LSSKDSQNSYQEFIKLKARVEVLQQSQRHILGEDLGQLNKKDLELLERQLDSSLRQIRSKRTQNMLDQLTDLQQKEQSLLEINRSLKLKLQ 172
                 678999********************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AQVALIIFSN RGKLYEFCST  60
SSMSEILERY HRCSYGDLAA GLSSKDSQNS YQEFIKLKAR VEVLQQSQRH ILGEDLGQLN  120
KKDLELLERQ LDSSLRQIRS KRTQNMLDQL TDLQQKEQSL LEINRSLKLK LQVQSGPIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.13e-83MIKC_MADS family protein