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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT47610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28703.2 Da PI: 9.3273 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fss+gkl+eys+ PHT47610.1 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSSKGKLFEYST 59 8***********************************************96 PP | |||||||
2 | K-box | 106.3 | 3.6e-35 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ ++++ ++ s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+LeqqL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L+k+++e PHT47610.1 76 AERQLNATDVETPGSWTFEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEQQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNNLSKQMKE 174 566777777888899********************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGRGRVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFSS KGKLFEYSTD 60 SCMERILERY ERYSYAERQL NATDVETPGS WTFEHAKLKA RLEVLQRNQR HYAGEDLDSL 120 SMKELQNLEQ QLDSALKHIR SRKNQLMHES ISELQKKDKA LQEQNNNLSK QMKEREKQLA 180 QQHTPWEQQN HDHLNSSSFG LPHPFNNNHL GEVYPTAGDN GEVEGSSRQQ QQNAAVMPPW 240 MLRHLNG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-107 | MIKC_MADS family protein |