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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT47459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 365aa MW: 41187.4 Da PI: 6.7274 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.5e-11 | 52 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ + Aa a++ a++k++g PHT47459.1 52 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEAAAAHAYDLAALKYWG 108 57*******************99998898888888*****99*************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 151 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PHT47459.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence |
MAKTSSKSNQ KNTAAATGSS SSSKKSDNNA IIGKPKRTRK SVPRDSPPQR SSIYRGVTRH 60 RWTGRYEAHL WDKNCWNESQ NKKGRQGAYD DEAAAAHAYD LAALKYWGQD TILNFPVETY 120 EKELKEMEDQ SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL 180 GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYIKWLRP SDQTDNITSN NPTEPNPNPN 240 TDDIHLLPNT KEDMSFNFLQ QQQQQQQSPC ADANVTALPA GGAAATSALG LLLQSSKFKE 300 MLERTTVVES PETPPEPDRP RRSFPDDIQT YFDGQESSSF MEEHDIIFGD LDSLTLPMFQ 360 CELDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 2e-89 | AP2 family protein |