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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT47259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 562aa MW: 62179.8 Da PI: 6.1637 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.6 | 6.3e-13 | 248 | 304 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++t+e+Aa+a++ a++k++g PHT47259.1 248 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 304 78*******************333.44555535555.77******************98 PP | |||||||
2 | AP2 | 46.5 | 9.2e-15 | 349 | 398 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PHT47259.1 349 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 398 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence |
MSNWLGFSLT PDFRIDNDID DNDDEEEVKN YVRRIEQNEA TDNIPLSVMP LSTDGSSLCM 60 MDAFPRCVPT EEDCWRYESH EMSTTTNPDG GPKLEDFLGC CYSNSPTNDE INVNIPPSVN 120 QSDHERQQLE IGANMKLMMV QNSQFQSSHH EFANTSTGNG YHVPFDGATS VSGFKSWLRQ 180 ASATATATAT ATAAPLISSA QEIGNPSNCQ ALSLAAAPKK RPVAGKNASV SKELVPRKSI 240 DSFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDTEEK AARAYDLAAL 300 KYWGPNTHIN SPLSTYEKEL EEMKTMNRQE FVAHLRRKSS GFSRGASMYR GVTRHHQHGR 360 WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS AVTNFDISRY DVKRICSSST 420 LIAGDLAKRS PSKDSVVFPS SYEDYNSCTT SPQPILAITN GEQFQQPVDS FMDMMPPMMA 480 AAGSSSRSSS SAPSPKCSGS GEMSCDFGVG LEYPQAYYSS VQVQDHKFED GRKGNNDDPP 540 SSGRIGNMDL VHPVPMFALW NQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-124 | AP2 family protein |