PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47259.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 562aa    MW: 62179.8 Da    PI: 6.1637
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.3e-13248304155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+e+Aa+a++ a++k++g
  PHT47259.1 248 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 304
                 78*******************333.44555535555.77******************98 PP

2AP246.59.2e-15349398355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PHT47259.1 349 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 398
                 9***************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MSNWLGFSLT PDFRIDNDID DNDDEEEVKN YVRRIEQNEA TDNIPLSVMP LSTDGSSLCM  60
MDAFPRCVPT EEDCWRYESH EMSTTTNPDG GPKLEDFLGC CYSNSPTNDE INVNIPPSVN  120
QSDHERQQLE IGANMKLMMV QNSQFQSSHH EFANTSTGNG YHVPFDGATS VSGFKSWLRQ  180
ASATATATAT ATAAPLISSA QEIGNPSNCQ ALSLAAAPKK RPVAGKNASV SKELVPRKSI  240
DSFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDTEEK AARAYDLAAL  300
KYWGPNTHIN SPLSTYEKEL EEMKTMNRQE FVAHLRRKSS GFSRGASMYR GVTRHHQHGR  360
WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGTS AVTNFDISRY DVKRICSSST  420
LIAGDLAKRS PSKDSVVFPS SYEDYNSCTT SPQPILAITN GEQFQQPVDS FMDMMPPMMA  480
AAGSSSRSSS SAPSPKCSGS GEMSCDFGVG LEYPQAYYSS VQVQDHKFED GRKGNNDDPP  540
SSGRIGNMDL VHPVPMFALW NQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-124AP2 family protein