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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT45640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 46023.7 Da PI: 9.9237 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.6e-15 | 81 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g PHT45640.1 81 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 140 789******************888855555447*************************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 183 | 234 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PHT45640.1 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 234 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MDLNKESYLV KSEMVSSGKR SMSMVDYDIP ETTKRVKRRR RSPPAVAVLN DNIGQQADQQ 60 KMDSSKVDQN IAHTPTVKRS SRFRGVSRHR WTGRYEAHLW DKGSWNVTQK KKGKQVYLGA 120 YDEEESAARA YDLAAIKYWG TSTFINFPIS DYDKEIEIMQ TVTKEEYLAS LRRRSSGFAR 180 GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN 240 FDLSTYIRWL KPGVNTQMAF QELRSENQAI QTNTNDMINP VNDPQFSFGS NYFATTRETL 300 PPIPKSQEPI ERKMPLSPKP SSPTALSLLL RSSMYRELVE KNSNTSASEK DKPNMKNKQQ 360 ANTEDDFVFY TSDKLPALAS MDKGTTSSPL CDRAGQSFWD VMP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-94 | AP2 family protein |