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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT41720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27698.5 Da PI: 9.3416 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.5 | 3.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++s PHT41720.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFAS 59 9***********************************************86 PP | |||||||
2 | K-box | 78.7 | 1.4e-26 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ + +q+e++ L+++++ Lq+++R+llGe+L+ Ls k+L +Le+q+e slk +R++K+++l+++i+el +k + +++en +L kk+ PHT41720.1 81 NPMSEVKFWQREVSSLRQQLHCLQENHRKLLGEELSGLSTKDLTNLENQIEMSLKGVRKQKEQILTDEIRELNRKGNLIHQENVELYKKV 170 6678899********************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFASN 60 SMRSTIDRYN KIKEENNNLM NPMSEVKFWQ REVSSLRQQL HCLQENHRKL LGEELSGLST 120 KDLTNLENQI EMSLKGVRKQ KEQILTDEIR ELNRKGNLIH QENVELYKKV NLIQQEYTEL 180 QKVSEQGCGS EPNGGVQATH TIRNGYDLHA PINLQLSQPQ TQKNGTSTSV MQLGLQLHYT 240 ED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 8e-96 | MIKC_MADS family protein |