PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT41010.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 444aa MW: 50853.6 Da PI: 5.9995

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT41010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38	4.2e-12	69	125	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+k + g ++++e Aa+ ++ a++k++g PHT41010.1 69 SIYRGVTRHRWTGRYEAHLWDkGTWNSnqKKKGKQ-GAYDSEEAAARTYDLAALKYWG 125 57*****************88886665556666.******************98 PP
2	AP2	52.6	1.1e-16	168	219	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I ++ +k+ +lg++ t eeAa+a++ a+ +++g PHT41010.1 168 SKYRGVARHHHNGRWEARIGRVYG---NKYLYLGTYSTQEEAAAAYDMAAIEYRG 219 89**99*******99654...4***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MKKSPSFSFS CSSSSSSSSC IEQQIHEVTE NKKLKLKPKP KPKPKPRPKR ASRAKRIANA 60 DSSPTKRSSI YRGVTRHRWT GRYEAHLWDK GTWNSNQKKK GKQGAYDSEE AAARTYDLAA 120 LKYWGPTTIL NFPVETYIKE FEEMHRLNKE EYLASLRRKS SGFSRGVSKY RGVARHHHNG 180 RWEARIGRVY GNKYLYLGTY STQEEAAAAY DMAAIEYRGP NAVTNFDISR YADWLKTLRE 240 PDLLSQMENT ESSNEVQSDE VIVQYQPVQQ EENQEDFMQE ELAFEPLFVP KLEFTPALDS 300 DEVTQPKVLK LEFAPKMESA ADIIKGKGYQ EEDDYPWSMY LDNTFGSFQV SDFCLDKPAD 360 LMDLFNNTGF DNNINFNLYE QSREQEFNNL DLFSDSMIID MVEGNNEEVR NNPSISPTSS 420 TAVSRTTSIS SDMKDMGGWT SSTK

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MKKSPSFSFS CSSSSSSSSC IEQQIHEVTE NKKLKLKPKP KPKPKPRPKR ASRAKRIANA  60
DSSPTKRSSI YRGVTRHRWT GRYEAHLWDK GTWNSNQKKK GKQGAYDSEE AAARTYDLAA  120
LKYWGPTTIL NFPVETYIKE FEEMHRLNKE EYLASLRRKS SGFSRGVSKY RGVARHHHNG  180
RWEARIGRVY GNKYLYLGTY STQEEAAAAY DMAAIEYRGP NAVTNFDISR YADWLKTLRE  240
PDLLSQMENT ESSNEVQSDE VIVQYQPVQQ EENQEDFMQE ELAFEPLFVP KLEFTPALDS  300
DEVTQPKVLK LEFAPKMESA ADIIKGKGYQ EEDDYPWSMY LDNTFGSFQV SDFCLDKPAD  360
LMDLFNNTGF DNNINFNLYE QSREQEFNNL DLFSDSMIID MVEGNNEEVR NNPSISPTSS  420
TAVSRTTSIS SDMKDMGGWT SSTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	6e-98	AP2 family protein