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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT40754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25296.8 Da PI: 9.4693 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.4 | 2.2e-19 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ k qvtfskRr g +KKA+EL++LC++e+a+i+fs+ k++ + PHT40754.1 18 IKVKNHLQVTFSKRRSGHFKKASELCTLCGVEIAIIVFSHVRKVFSF 64 6667788*********************************9999877 PP | |||||||
2 | K-box | 14.9 | 1.1e-06 | 126 | 180 | 27 | 79 |
K-box 27 eienLq.reqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++++ ++qR+ +e +++L+l+eL+qL++ Le+ k + ++ +++++++i + PHT40754.1 126 SLDQMRkTSQRKCWWEApISQLDLQELEQLKDSLESLKKYVYNQTSKFMVNEIAN 180 466777788999999955*****************99999***********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MAKKPSSMGR QKIKIAKIKV KNHLQVTFSK RRSGHFKKAS ELCTLCGVEI AIIVFSHVRK 60 VFSFGHPNVE SLIDWFLSRN NTNNNPIVNN SLQLFEAHLN ANVCGLNLQL TQILGEVEIE 120 KKKGESLDQM RKTSQRKCWW EAPISQLDLQ ELEQLKDSLE SLKKYVYNQT SKFMVNEIAN 180 SSNFFGDNGN GIFDNYDTKP PRTMPSSSDL DNHSLGFDSA APF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-46 | M-type_MADS family protein |