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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT39876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28980.9 Da PI: 8.794 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.1e-31 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs +gklye+ PHT39876.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 57 79**********************************************9 PP | |||||||
2 | K-box | 101.5 | 1.2e-33 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e++++s++qe++kLk++ e Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R +K+++++eq+eel++ke+ l + nk+L+ k+ PHT39876.1 80 CGERETQSWYQEVSKLKAKFEALQRTQRHLLGEDLGTLSVKELQNLEKQLEGALAQARHRKTQIMMEQMEELRRKERHLGDVNKQLKIKV 169 56889*********************************************************************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSG RGKLYEFGNA 60 GITKTLERYQ RCCINPQDNC GERETQSWYQ EVSKLKAKFE ALQRTQRHLL GEDLGTLSVK 120 ELQNLEKQLE GALAQARHRK TQIMMEQMEE LRRKERHLGD VNKQLKIKVS LELSSFETEG 180 QGLRALPNFP WSCNASAEAG SSSFHVHHSQ SNHMDCDQPD PVLQIGYQQY MSADGASGSR 240 SNMAIESNII HGWGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-107 | MIKC_MADS family protein |