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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT38374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | AP2 | ||||||||
Protein Properties | Length: 446aa MW: 49339.6 Da PI: 6.2352 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 142 | 191 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT38374.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.2 | 2e-13 | 234 | 284 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g PHT38374.1 234 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 284 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence |
MFDLNVGLEE DVVETVNTFE KLNELSVGQI ENSGTSNSSI VNLESSSNAG DDEFISGSDH 60 HHHHRHPDEY AFDILTKEFF PLTGGETTAV AAPELEKQQQ WLDLSANYGG VPMEQRVLVA 120 PPPPQQRQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR 180 AYDRAAIKFR GLDADINFNV SDYHDDLKQM ANFSKEEFVH ILRRQSTGFA RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKYI YLGLFDSEIE AARAYDKAAI KCNGREAVTN FELSTYEDEL 300 STEADNGDHN LDLNLGIAPS VLAGDQLGNT CQMGNYEVQS ASNGLPSYIG AMNSPSTEMG 360 SKLPHGNQLL TNRPLLWNGV NTSIFPTFKG TALGKGMEID SSPNWSPSVP LFSTAASSGF 420 ANSTTAAAHL PSFSNNMNFA HYYCRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-103 | AP2 family protein |