PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34346.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 541aa MW: 59763.4 Da PI: 6.465

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	177	234	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g rk + g ++ +e+Aa+a++ a++k++g PHT34346.1 177 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqSRKGRQAGGYDKEEKAARAYDLAALKYWG 234 57*****************5555444555***********************98 PP
2	AP2	47.5	4.5e-15	279	328	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PHT34346.1 279 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 328 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MNSNNWLSFP LSPTHSSLPP HLQTTQSHHF SLGLVNETID NPFQSQEWNL INTQGSSEVP 60 KVADFLGMNK SENQSDLVPY NEIQANDSDF LFQNNSLMPV QNAVAAAPAS NYDLQENACN 120 IQSLTLSMGS GKGSTSETSA SPSATATTAS ASAENSNTSI VEAAPRRTLD TFGQRTSIYR 180 GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QAGGYDKEEK AARAYDLAAL KYWGTSTTTN 240 FPISNYEKEL EDMKHMTRQE FVAAIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG 300 NKDLYLGTFT TEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKSILESNT LPIGGGAAKR 360 LKEAQALESS RKRDQEMMAL NSSFQYGNST ALQAYPLMQQ QPFDSQPLLT LQNHDISQYN 420 IQESSSHFHQ NYLQTQLQLQ NSSHQLYNNY LQNNPVFLHG LMNSEGSSSG SYSTGGYFGN 480 STGLGGINSH SISDNGGGNA HEEVALVKVD YDNMPVSGSY NGWSGESVQG SNTGVFSMWN 540 D

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MNSNNWLSFP LSPTHSSLPP HLQTTQSHHF SLGLVNETID NPFQSQEWNL INTQGSSEVP  60
KVADFLGMNK SENQSDLVPY NEIQANDSDF LFQNNSLMPV QNAVAAAPAS NYDLQENACN  120
IQSLTLSMGS GKGSTSETSA SPSATATTAS ASAENSNTSI VEAAPRRTLD TFGQRTSIYR  180
GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QAGGYDKEEK AARAYDLAAL KYWGTSTTTN  240
FPISNYEKEL EDMKHMTRQE FVAAIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  300
NKDLYLGTFT TEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKSILESNT LPIGGGAAKR  360
LKEAQALESS RKRDQEMMAL NSSFQYGNST ALQAYPLMQQ QPFDSQPLLT LQNHDISQYN  420
IQESSSHFHQ NYLQTQLQLQ NSSHQLYNNY LQNNPVFLHG LMNSEGSSSG SYSTGGYFGN  480
STGLGGINSH SISDNGGGNA HEEVALVKVD YDNMPVSGSY NGWSGESVQG SNTGVFSMWN  540
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein