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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27620.2 Da PI: 8.6012 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.1 | 3.6e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+nk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+gklye++s PHT29688.1 9 KRIDNKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 98.7 | 8.8e-33 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +a++++ +qe+ kLk ++e Lq++qRh+lGedL++L++k+L+qLe+qL++sl++iRs+K++++l+q+ el +ke++l e nk+L++klee PHT29688.1 82 QPSADSQNNYQEYLKLKTRVEVLQQSQRHMLGEDLGELNIKDLEQLEHQLDSSLRQIRSTKTQHMLDQLAELHQKEQSLTEMNKSLKTKLEE 173 467789***********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MGRGKVELKR IDNKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFCSS 60 SSMSKTLERY HRYNYGALEG TQPSADSQNN YQEYLKLKTR VEVLQQSQRH MLGEDLGELN 120 IKDLEQLEHQ LDSSLRQIRS TKTQHMLDQL AELHQKEQSL TEMNKSLKTK LEELGVAFQT 180 SWHSGEQSVQ YRQQQPEGFF QHVDYNNTVS DIRYGYAAML PKHAAPSTQD ASGVVPGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 1e-89 | MIKC_MADS family protein |