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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT29529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22535.1 Da PI: 9.2323 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.4 | 7.6e-23 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i ++ rq+ f+kRr+g++KKA ELS+LCd++v v+i+s++g+l+e+ss PHT29529.1 10 PILDNNCRQIAFCKRRKGLIKKARELSILCDVDVGVVIVSNRGRLHEFSS 59 6778889*****************************************96 PP | |||||||
2 | K-box | 35.2 | 5.2e-13 | 91 | 169 | 20 | 98 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ e Lq + R++ + + L++ +L +Le++L++ l + Rs+K++llle++++l ++ek l+eenk L+ ++ PHT29529.1 91 KYSRFMTMGELLQATERQFEEINADGLTVTDLVHLENELQTTLIQTRSRKTHLLLESVKDLHEQEKLLREENKLLEDNI 169 56677777889999999998888899***********************************************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MGRKKLEIKP ILDNNCRQIA FCKRRKGLIK KARELSILCD VDVGVVIVSN RGRLHEFSST 60 NSMTGILQRY ERHVEAAKEI SAEIQVAELS KYSRFMTMGE LLQATERQFE EINADGLTVT 120 DLVHLENELQ TTLIQTRSRK THLLLESVKD LHEQEKLLRE ENKLLEDNIA GMKKNRKVNE 180 MSHLPPQRVT LNFLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 1e-36 | MIKC_MADS family protein |