![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT27207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 168aa MW: 18904.9 Da PI: 9.9515 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.9 | 3.2e-24 | 25 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS..EEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg..klyeyss 51 k+i++k rqvtf+kRr+g++KKA+ELS+LCd++v v+i+s++g +l+e+s+ PHT27207.1 25 KKIQDKNCRQVTFCKRRKGLMKKANELSILCDVDVGVVIISNNGagRLHEFSN 77 689***************************************85338***985 PP | |||||||
2 | K-box | 19.8 | 3.2e-08 | 110 | 152 | 27 | 69 |
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 e Lq++ R++ + + + +L +Le++L+++l +iRs+K PHT27207.1 110 IGELLQTTERQFEETNADGFAVTDLVHLENELQTALIQIRSTK 152 45789999999999999************************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence |
METCGNIGLG FKKKKKMGRR KLEIKKIQDK NCRQVTFCKR RKGLMKKANE LSILCDVDVG 60 VVIISNNGAG RLHEFSNTNS VTGILQRYKS HIKEEKEISG EHSKYSSMKI GELLQTTERQ 120 FEETNADGFA VTDLVHLENE LQTALIQIRS TKVFLQSSVP CPIGIASF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65070.1 | 7e-25 | MIKC_MADS family protein |