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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027126052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 493aa MW: 54418.6 Da PI: 8.768 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 1e-15 | 151 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + +g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027126052.1 151 SQYRGVTRHRWTGRYEAHLWDnSCRkQGqtRKgRQVYLGGYDQEEKAARAYDLAALKYWG 210 78*******************655565588446*************************98 PP | |||||||
2 | AP2 | 46.5 | 9.2e-15 | 255 | 304 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ +++g XP_027126052.1 255 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIRFRG 304 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence |
MEIERREHLI TTTATPSSSS LIHPSYPFSY HMSSQDTISN RCDPNSNMNG MSYHVPFDGA 60 TTVSGFKSWL RQTPSPADTN EFSVQESNQN NFEALSLGIN PGAADQPGTS SLLLQVADRN 120 KKRDNSMANR SSAKDSAAPR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCRKQGQT 180 RKGRQVYLGG YDQEEKAARA YDLAALKYWG PTTHINFPLC SYEKELEDMK ATTRQEFVAH 240 LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI 300 RFRGTSAVTN FDISRYDVRR ICSSSTLIAG DLAKAKRSPR NSRPSSVVDD NNSCASSASP 360 QPLAAITNPE ASQHGWNVMV WSSSTDHDQR LQDHETNSND MLQFSASGSR CSSTPQSPKD 420 PVGSTGSPGK NGGECGVEGD YSQLYFSLEG PNSKPKYGDG NNGSEDRDTS SNRLANTGSV 480 HPVPMFSLWN SSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-125 | AP2 family protein |