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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027126012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 540aa MW: 59964.9 Da PI: 8.4485 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.4 | 2.3e-15 | 197 | 256 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027126012.1 197 SQYRGVTRHRWTGRYEAHLWDnSCRkEGrtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 256 78*******************655454477446*************************98 PP | |||||||
2 | AP2 | 46.6 | 8.7e-15 | 301 | 350 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027126012.1 301 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence |
MGRCYTTNSP PPDPSSNIER RVYCQLPQQQ QGEINVNIPP HCNDWEMEIE RREHLITTTA 60 TPSSSSLIHP SYPFNYHMYS QDTISNRCDP NSNMNGMLYH VPFDGATTVS GFKSWLRQTP 120 SPADTNEFSV QESNQNNFEA LSLGINPGAA DQPGTSSLVL QVADTNKKRD NSMANKSSAK 180 DSAAPRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC RKEGRTRKGR QVYLGGYDKE 240 EKAARAYDLA ALKYWGPTTH INFPLCSYEQ ELEDMKAMSR QEFVAHLRRK SSGFSRGASM 300 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS 360 RYDVRRICSS STLIAGDLAK AKRSPRNSRP SSVVDGNNSC ASSASPQPLV AITNREASQH 420 GWNVMVWSSS TDHDQRLQDH ETNSNDMLQF SASGSRCSST PQSPKDPVGS TGSPGKNGGE 480 FGVEGDYSQL YFSLEGPNSK PKYGDGNNNG SEDRDTSSNR LANTGSVHPV PMFTLWNSSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-126 | AP2 family protein |