PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 540aa    MW: 59964.9 Da    PI: 8.4485
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15197256155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_027126012.1 197 SQYRGVTRHRWTGRYEAHLWDnSCRkEGrtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 256
                     78*******************655454477446*************************98 PP

2AP246.68.7e-15301350355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_027126012.1 301 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350
                     9***************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MGRCYTTNSP PPDPSSNIER RVYCQLPQQQ QGEINVNIPP HCNDWEMEIE RREHLITTTA  60
TPSSSSLIHP SYPFNYHMYS QDTISNRCDP NSNMNGMLYH VPFDGATTVS GFKSWLRQTP  120
SPADTNEFSV QESNQNNFEA LSLGINPGAA DQPGTSSLVL QVADTNKKRD NSMANKSSAK  180
DSAAPRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC RKEGRTRKGR QVYLGGYDKE  240
EKAARAYDLA ALKYWGPTTH INFPLCSYEQ ELEDMKAMSR QEFVAHLRRK SSGFSRGASM  300
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS  360
RYDVRRICSS STLIAGDLAK AKRSPRNSRP SSVVDGNNSC ASSASPQPLV AITNREASQH  420
GWNVMVWSSS TDHDQRLQDH ETNSNDMLQF SASGSRCSST PQSPKDPVGS TGSPGKNGGE  480
FGVEGDYSQL YFSLEGPNSK PKYGDGNNNG SEDRDTSSNR LANTGSVHPV PMFTLWNSSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-126AP2 family protein