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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027124636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 384aa MW: 42656.6 Da PI: 6.7913 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 7.1e-16 | 57 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_027124636.1 57 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 116 78*******************999955656446*************************98 PP | |||||||
2 | AP2 | 51.1 | 3.4e-16 | 159 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_027124636.1 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 210 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
MAKSSKQKTS STTTTTTTSI DADNNNSSNS TTPVVKTTKT KRTRKSVPRD SPQQRSSVYR 60 GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI 120 LNFPLSTYGN ELSEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV 180 FGNKYLYLGT YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYVKRLRPNQ TGNGVNNVAS 240 SEQNPNVDLE VNPIKDDASE EVDLSFIHQQ QQQQHSSSSP DTSTTTTTTT TAPQPCPAGG 300 ATASSASGLL LQSSKCKEML ERASAVDSPS TPPEQPEPPR RSFPDDIQTY FACQDSGNFA 360 DEHDNIFGDY NPFASTMFPC ELDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-88 | AP2 family protein |