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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027121366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 426aa MW: 47943.9 Da PI: 4.9204 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 9e-15 | 56 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+ ++ a++k++g XP_027121366.1 56 SIYRGVTRHRWTGRFEAHLWDkTTWNAiqtKKgRQIYLGAYDNEEAAARTYDLAALKYWG 115 57*******************666699988557*************************98 PP | |||||||
2 | AP2 | 57.6 | 3.2e-18 | 158 | 210 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+++++g+ XP_027121366.1 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDLAALEYRGP 210 89****99**********99966...3.6**************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence |
MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG 60 VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE AAARTYDLAA LKYWGPGTIL 120 NFPLENYSEE LEEMEKLTKE EYLTTLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF 180 GNKYLYLGTY GTQEEAAMAY DLAALEYRGP NAVTNFDISR YADKLKTLQK MHTENPESST 240 EKQVDEQEDH EEQVQEEKPV VEEQVQEEKP VAELNVPNIA TTKSESQDNL GQHLQQKKPV 300 AEPTVSNVAA TEPEQIVMMD PADEHEDHWN LCLDTALNSL PVSDITFEKT AELPNLFTDA 360 GFEASIDFIF DAPFDIDEFI EEDAAGSPAF EIDVDSFLRG EEKEPEATTS PSQSSSSTIT 420 SVGSNI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-72 | AP2 family protein |