PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108604.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 506aa    MW: 55812.2 Da    PI: 6.2032
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.7e-17167216155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_027108604.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                     78*******************......55************************997 PP

2AP2422.3e-13259309155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_027108604.1 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 309
                     89********.7******5553..2.26**********99**********99776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG  60
ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG  120
PGRAPDQARS NASNWADLSF SHQPKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY  300
DKAAIKCNGR EAVTNFEPST YEPEMPSNMV QPHSQNEGSH YDLDLNLGIS TSSGKENGSS  360
RDVHYHPYDV QKARISKVDI SSTTVNSPPL KGLPLTPERP QLWTGVYSNS MPNYKERVIE  420
NRFEVGSSQG XQKWAWQMQS QLSATPVTVF STAASSGFSS SASNASSPSS KAPNSSAVGL  480
CFASYPVSSA NNSQCRFQLG PQWPPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-107AP2 family protein