![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027092291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 679aa MW: 74787.7 Da PI: 6.6998 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 324 | 383 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027092291.1 324 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 383 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.4 | 9.9e-15 | 426 | 477 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027092291.1 426 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 477 57****************988532...5************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 679 aa Download sequence |
MKSVNDNNNG NDASSNNNCN APNWLGFSLS PYMKMEVTSS SSSSEHHHHQ FNHQNQPPPT 60 STSTDVPTSF CLSSPPHLNN IASPVCFGVS ENGGFHHAPL SVMPIRSDGS LCIMEALRRS 120 QTEAMGPNSS PKLENFFGGA TMGTHQYGSQ DRETMVLSLD SIFYSQNVEP EGEPIRQENP 180 YFSGLQCQDM YQHPLHEEND ETRVADCDTQ IPTMAGEDLK NWVAVDYSDQ HALDQQQLNT 240 APMVEGGNGS GSGSVGSVGC GDLQSLSLSM SPGSQSSCVT APRHISPTEA ECLAIETKKR 300 SCGKVAQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY 360 LGGYDMEEKA ARAYDLAALK YWGPSTHINF PLENYQQELE GMKNMSRQEY VAHLRRKSSG 420 FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA 480 VTNFDISRYD VERIMASNTL PAGELARRNK ETEPNNETIA YANAAHKSEE CFQPERNANV 540 SDWKMAPYQP PQQQQNLPMD SFNEKIMNVV HYQNPSYSTA LHGLIGIDSG NSSRGIVDES 600 AKLGAHFSNS SSLVTSLNSS REASPDRSGT SMLFAAKPTS AANYVNPTAN VGSWIPSAQL 660 KPVPISMAHL PVFAAWGDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-129 | AP2 family protein |