PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089304.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 505aa MW: 55355.3 Da PI: 6.9263

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.1	7.8e-17	201	250	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027089304.1 201 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 250 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAAATAT LLTDHDSGAS SSVLIIADEE 60 SNSSSPPTHN QPHHRCTTTT LNFSILNTTG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP 120 VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ QQHQLGQPYQ 180 QHQVAGGGAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHTAARA 240 YDRAAIKFRG VDADINFHIS DYADDLKQMQ NLAKEEFVHI LRRQSTGFSR GSSKYRGVTL 300 HKCGRWEARM GQFLGKKAYD KAAIKCNGRE AVTNFEPSAY EGEISGAAKD GDAGRGDNLD 360 LNLWISPASD GQKEIGDSKS SCAHYAASDD KMIKVENSFN TPEYLPMASQ DSSVWTHTYS 420 GFGPKNEERA RKMRPEGIPI PGLSNWPWKM HCHGVITSVP LFPSAASSGF STVTATSTTL 480 VSTNAPNKIV HTSAFQHPPL TLNYN

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAAATAT LLTDHDSGAS SSVLIIADEE  60
SNSSSPPTHN QPHHRCTTTT LNFSILNTTG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP  120
VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ QQHQLGQPYQ  180
QHQVAGGGAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHTAARA  240
YDRAAIKFRG VDADINFHIS DYADDLKQMQ NLAKEEFVHI LRRQSTGFSR GSSKYRGVTL  300
HKCGRWEARM GQFLGKKAYD KAAIKCNGRE AVTNFEPSAY EGEISGAAKD GDAGRGDNLD  360
LNLWISPASD GQKEIGDSKS SCAHYAASDD KMIKVENSFN TPEYLPMASQ DSSVWTHTYS  420
GFGPKNEERA RKMRPEGIPI PGLSNWPWKM HCHGVITSVP LFPSAASSGF STVTATSTTL  480
VSTNAPNKIV HTSAFQHPPL TLNYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-81	AP2 family protein