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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027089303.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 520aa MW: 57083.2 Da PI: 6.7292 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8.2e-17 | 201 | 250 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027089303.1 201 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 250 78*******************......55************************997 PP | |||||||
2 | AP2 | 41 | 4.6e-13 | 293 | 343 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_027089303.1 293 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 343 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence |
MLLDLNIDAD AAAAASVDSA CDETDPFPCP VKTTAAATAT LLTDHDSGAS SSVLIIADEE 60 SNSSSPPTHN QPHHRCTTTT LNFSILNTTG EDHIIQILDN DQDFDNDDHR QGLMTRQFFP 120 VVPNNDPFPF PTTTTTTTAR PPQWLKLSVP EAAAAGEIGG IYNKGQQQQQ QQHQLGQPYQ 180 QHQVAGGGAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHTAARA 240 YDRAAIKFRG VDADINFHIS DYADDLKQMQ NLAKEEFVHI LRRQSTGFSR GSSKYRGVTL 300 HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF EPSAYEGEIS 360 GAAKDGDAGR GDNLDLNLWI SPASDGQKEI GDSKSSCAHY AASDDKMIKV ENSFNTPEYL 420 PMASQDSSVW THTYSGFGPK NEERARKMRP EGIPIPGLSN WPWKMHCHGV ITSVPLFPSA 480 ASSGFSTVTA TSTTLVSTNA PNKIVHTSAF QHPPLTLNYN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 7e-93 | AP2 family protein |