PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027089167.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 404aa MW: 44895 Da PI: 9.3105

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027089167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.2	3.5e-17	49	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_027089167.1 49 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 108 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MVGPIPGGGG AGDELAMYRG LKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT 60 GRYEAHLWDK STWNQNQNKK GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY 120 TRDLEEMQNF SREDYLASLR RKSSGFSRGV SKYRPLSSRW DPQFGQFSGA DYFTSIRYGA 180 ADDATAENEY IGGFCIDRKF DLTTYIKWWG TNKPRQVDPH AKSSEETSYR PGEDMSSELK 240 SVELTAKPTE PMRXPRLGVP QEGKHRKGAV SAMSILSQSA AFKSLQEKGL KKKAIDENDE 300 NEDKNVINKK DYGKGVEKCS HDGGNERVGA GLGMTGGLPV PRNVYPLTPL LTAPLVTNYN 360 SIDSLNDPVL WTSLVSVLPV GSSRTSEVAK NESSSEYNLF QQEG

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MVGPIPGGGG AGDELAMYRG LKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT  60
GRYEAHLWDK STWNQNQNKK GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY  120
TRDLEEMQNF SREDYLASLR RKSSGFSRGV SKYRPLSSRW DPQFGQFSGA DYFTSIRYGA  180
ADDATAENEY IGGFCIDRKF DLTTYIKWWG TNKPRQVDPH AKSSEETSYR PGEDMSSELK  240
SVELTAKPTE PMRXPRLGVP QEGKHRKGAV SAMSILSQSA AFKSLQEKGL KKKAIDENDE  300
NEDKNVINKK DYGKGVEKCS HDGGNERVGA GLGMTGGLPV PRNVYPLTPL LTAPLVTNYN  360
SIDSLNDPVL WTSLVSVLPV GSSRTSEVAK NESSSEYNLF QQEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-146	AP2 family protein