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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027084500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 416aa MW: 46862 Da PI: 9.2618 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 78 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027084500.1 78 SRFRGVSRHRWTGRFEAHLWDkASWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAIKYWG 137 789******************888888876447************************987 PP | |||||||
2 | AP2 | 40.1 | 8.8e-13 | 177 | 225 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GV+ ++ rW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_027084500.1 177 RGVSKYRGVARWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 225 67776666678999998856...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence |
MELSIVKSEA SARGRSYCLV ESDVPETKCV RRRRRSPSAL TVLTGEASPG GRDQQQPQIQ 60 QVDQNNGANA TTTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNATQKKKG KQVYLGAYDE 120 EEAAARAYDL AAIKYWGIST FTNFPISDYA NEIEIMQNLT KEEYLASLRR RSSGFARGVS 180 KYRGVARWEA RIGRVFGNKY LYLGTYGTQE EAARAYDIAA IEYRGINAVT NFDLSTYIKW 240 LKPGSSSTAS HDLLTSQPVE TASIHNFNLT DHQEPHRHEF SFNPNSFKSG PLSIPQKQEV 300 IERKMPLSPC SMSSSPTALS LLLRSSMFRE MVEKTSNADN DDQNDGNDLK NQPVQGGGHQ 360 QDDFSFFPGS SLSFPYFYPF NSGHKLPELA SEEKRVSPFS ASRWNDAFNT SPFFNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-72 | AP2 family protein |