PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080853.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 416aa MW: 46871.9 Da PI: 9.2618

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.4	9.7e-15	78	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027080853.1 78 SRFRGVSRHRWTGRFEAHLWDkASWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAIKYWG 137 789****************888888876447***********************98 PP
2	AP2	40.1	8.8e-13	177	225	4	55
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GV+ ++ rW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_027080853.1 177 RGVSKYRGVARWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 225 67776666678999998856...3.6*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ 60 QVDQNNGANA TTTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNATQKKKG KQVYLGAYDE 120 EEAAARAYDL AAIKYWGTST FTNFPTSDYA NEIEIMQNLT KEEYLASLRR RSSGFARGVS 180 KYRGVARWEA RIGRVFGNKY LYLGTYGTQE EAARAYDIAA IEYRGINAVT NFDLSTYIKW 240 LKPGSSSTAS HDLLTSQPVE TASIHNFNLT DHQEPHRHEF SFNPNSFKSG PLSVPQKQEV 300 IERKMPLSPC SMSSSPTALS LLLRSSMFRE MVEKTSNADN DDQNDGNDLK NQPVQGGGHQ 360 QDDFSFFPGS SLSFPYFYPF NSGHKLPELA SEEKRVSPFS ASRWNDAFNT SPFFNS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ  60
QVDQNNGANA TTTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNATQKKKG KQVYLGAYDE  120
EEAAARAYDL AAIKYWGTST FTNFPTSDYA NEIEIMQNLT KEEYLASLRR RSSGFARGVS  180
KYRGVARWEA RIGRVFGNKY LYLGTYGTQE EAARAYDIAA IEYRGINAVT NFDLSTYIKW  240
LKPGSSSTAS HDLLTSQPVE TASIHNFNLT DHQEPHRHEF SFNPNSFKSG PLSVPQKQEV  300
IERKMPLSPC SMSSSPTALS LLLRSSMFRE MVEKTSNADN DDQNDGNDLK NQPVQGGGHQ  360
QDDFSFFPGS SLSFPYFYPF NSGHKLPELA SEEKRVSPFS ASRWNDAFNT SPFFNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	5e-73	AP2 family protein