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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027078436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 677aa MW: 74631.7 Da PI: 7.1679 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.4e-16 | 331 | 390 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027078436.1 331 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 390 789******************988886678446*************************98 PP | |||||||
2 | AP2 | 41.7 | 2.8e-13 | 435 | 485 | 3 | 55 |
AP2 3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027078436.1 435 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 485 9****99**********988532...5*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence |
MKSLSNGNTS NNSNTNWLGF SLSPQMNKMD GGAAAAASAD HPSQTALPCS NAVSSSVALS 60 FSHPSSHFNY PGIYRGIEGD NAAAFYSPVT VMPLKSDGSL CIMEAMNVSQ PQGMLSTPKL 120 ENFFGGTTMG THHYEAGERR SMALSLDSMY YHQSLNHAPS SQDFLNNLQG NSRQQEQQRQ 180 QQIQVQQYAE YSPFRCHEFY QASEQGSKET HLAETNLQLP IMADNDLSGM KNWVSRNYLG 240 DHSLEPKMTG GGVANRCESG SFGAMGYGDL QSLSLSMSPG SQSSCITGSQ QISPTGTECV 300 AIETKKRGPE KVEQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQHELEEMK SMARQEYVAH 420 LRRKSSGFSR GASMYRGVTS RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA 480 IKFRGANAVT NFDISRYDVD RIMASSNLLA GELARRNNNL ESSNDISIGN PSNLNCNEEV 540 NTTSKENNDN VLDWNVALHQ FPLQKPGDPE HFKTSSFPVS VNDLMGMETL STTAHQEAAG 600 SGKMMTHFSE PSSLVTSLSC SREGSPDKSN SLPMQFTVPP AASKLFASPS PHTANPWISS 660 TQMRPHVSVF ASWTDAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-130 | AP2 family protein |