PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077823.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 495aa    MW: 54894.7 Da    PI: 6.456
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-15212271155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_027077823.1 212 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 271
                     57*******************666664478446*************************98 PP
2AP250.36e-16314365155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_027077823.1 314 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 365
                     57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MAPENNWLSF SLSSMEMLSS SASQPQMLQS TMKLAPFDAD SQQHYYYSDH FYTNGWQNAK  60
PEEVTEQSNM NVYTTFLDQN QAPPKLEDFL GGDSTETQDS SLTHISASAA AAAYFNDHHH  120
QDLKNITGFQ AFSTNSGSEV DDSASVARTQ VMCAEFTGQS IESGTELAYP QCPTGALSLG  180
VNAQNPPDQK AIVAVDSQSC KKITDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  240
ARKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTATTNFPV SNYSKELEEM KHVTKQEFIA  300
SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA  360
IKFRGMNAVT NFEMNRYDVE AIMKSALPIG GAAKRLKLSL ESEQKPSISN DQQTQCSSNG  420
SNTINFAAFQ PISSVPCGVP FDNTPPPYYH HNLFHQISSN NTAGTPDTTG PISMITPVPL  480
LPSSAEFFLW PHQSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-170AP2 family protein