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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027075404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 529aa MW: 58273.7 Da PI: 6.796 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.8e-17 | 171 | 220 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027075404.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.7 | 6.8e-14 | 263 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_027075404.1 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 313 89********.7******5553..2.26**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence |
MWDLNDSPDQ RWDDESEGCS SPVDGEDDKG KRVGSVSNSS SSAVVIEDGY SDEEVGELRG 60 GSRKRGTSTS RIFGFAVSAH NDDNCSSESD QPPVTRQFFP VDESDMGVGT SSGGCNEGAS 120 SGSGVPDLPR APWVGVKFCQ SEPLGGGVLG KSTEVSQPLK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLA DYEDDLKQMS 240 NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA 300 ARAYDKAAIK CNGKDAVTNF DPSIYEDELN SSESGGGAAD HNLDLSLGNS ASKLSSSHRG 360 MAPNVDPSKD QHSASMHFQV DWRRHHDHGF RSKENNPNDV ESSRRDGYSE AEAAQLLSQT 420 HLHSPGSMKP KEIQKYGQFR RGGESHIFQM LPPQFNSSNY HFQFPSSSNG GLIGASGDLS 480 LSTSDPHWQY NPPHFYGTAA ASSGFPQQIV RPQDWTQKNG FHHHLMRPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 1e-122 | AP2 family protein |