PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074601.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 377aa    MW: 42995.1 Da    PI: 8.6396
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-1475134155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  XP_027074601.1  75 SRFRGVSRHRWTGRFEAHLWDkLSWNIaqkKKgKQVYLGAYDDEEAAARAYDLAAIKYWG 134
                     789******************888855665447*************************98 PP

2AP252.51.3e-16177228155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  XP_027074601.1 177 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 228
                     89****99**********99966...3.6*************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MSTFIKSEEN PGRRRMCTAD AGAPDGRSVK RRRRDQQTAA ADAFPLACPG QQMQQQQLEQ  60
LVDLSSAPTT VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN IAQKKKGKQV YLGAYDDEEA  120
AARAYDLAAI KYWGTSTFTN FPITDYEKEI ETMQTVTKEE YLASLRRKSS GFSRGVSKYR  180
GVARHHHNGR WEARIGRVFG NKYLYLGTYS TQEEAARAYD IAAIEYRGIN AVTNFDLSTY  240
IRWLKPGVNP AASAQESEPI IHPQTPPSHD FRAGETNQSF IFQRSFSTGD LNKEEICERQ  300
LPVYSCNKSS SPTALGLLLR SSIFRELVAK NSIVSDEEND SESGKVQPQV VNDEYLAEMF  360
ETEMELPIWC NFRELRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRMCTADAGAPDGRSVKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-84AP2 family protein