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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027074601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 377aa MW: 42995.1 Da PI: 8.6396 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 75 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027074601.1 75 SRFRGVSRHRWTGRFEAHLWDkLSWNIaqkKKgKQVYLGAYDDEEAAARAYDLAAIKYWG 134 789******************888855665447*************************98 PP | |||||||
2 | AP2 | 52.5 | 1.3e-16 | 177 | 228 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_027074601.1 177 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 228 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence |
MSTFIKSEEN PGRRRMCTAD AGAPDGRSVK RRRRDQQTAA ADAFPLACPG QQMQQQQLEQ 60 LVDLSSAPTT VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN IAQKKKGKQV YLGAYDDEEA 120 AARAYDLAAI KYWGTSTFTN FPITDYEKEI ETMQTVTKEE YLASLRRKSS GFSRGVSKYR 180 GVARHHHNGR WEARIGRVFG NKYLYLGTYS TQEEAARAYD IAAIEYRGIN AVTNFDLSTY 240 IRWLKPGVNP AASAQESEPI IHPQTPPSHD FRAGETNQSF IFQRSFSTGD LNKEEICERQ 300 LPVYSCNKSS SPTALGLLLR SSIFRELVAK NSIVSDEEND SESGKVQPQV VNDEYLAEMF 360 ETEMELPIWC NFRELRH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 34 | RRRMCTADAGAPDGRSVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-84 | AP2 family protein |