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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027074155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 494aa MW: 54823.6 Da PI: 6.3472 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.1e-15 | 212 | 271 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027074155.1 212 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 271 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 50.3 | 6e-16 | 314 | 365 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_027074155.1 314 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 365 57****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence |
MAPENNWLSF SLSSMEMLSS SASQPQMLQS TMKLAPFDAD SQQHYYYSDH FYTNGWQNSK 60 PEEVTEQSNM NVYTTFLDQN QAPPKLEDFL GGDSTETQDS SLTHISASAA AAAYFNDHHH 120 QDLKNITGFQ AFSTNSGSEV DDSASVARTQ VMCAEFTGQS IESGTELAYP QCPTGALSLG 180 VNAQNPPDQK AIVAVDSESC KKITDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ 240 ARKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTATTNFPV SNYSKELEEM KHVTKQEFIA 300 SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA 360 IKFRGMNAVT NFEMNRYDVE AIMKSALPIG GAAKRLKLSL ESEQKPSISS DQQTQCSSNG 420 SNTINFAAFQ PISSVPCGVP FDNTPPPYYH HNLFHQISSN NTGTPDTTGP ISMITPVPLL 480 PSPAEFFLWP HQSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.1 | 1e-171 | AP2 family protein |