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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027062561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 540aa MW: 59499.2 Da PI: 6.5629 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.2e-15 | 166 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027062561.1 166 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 225 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 49 | 1.5e-15 | 268 | 319 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_027062561.1 268 SQYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 319 78****************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence |
MNSNNWLSFP LSPTHSSIPA HLQTAQSHHF SLGLVNENID NPFQNQEWNL INTHGNSEVP 60 KVADFLGVGK SENQSEIVSY SELQANDSDY LFSNSSLVPV PNALAAAASN NYELQESGSS 120 MQSLTLSMGS GKGSTCETSA SVDNSNSSIV EAAPRRTLDT FGQRTSIYRG VTRHRWTGRY 180 EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE 240 LEEMKHMTRQ EFVASIRRKS SGFSRGASQY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 300 STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKAILESN TLPIGGGAAK RLKEAQALES 360 SRKREEMIGL GSSFQYGSSS SGPFQAYPLM QQPFDAQPLL TLQNHEISEY SQDSQYQSYI 420 QTQLQLHQQS GSYLHPSSHN SHFYNNYLQS NPVLLHGLMN MGSSSSVMDN NGSSSGSYSG 480 GYLGNGLGMT SNSTSGNARG SAEELGLVKV DYDMPSGTYT GWSGESVQGS NPSVFPMWND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |