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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0395s0041.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 268aa MW: 29580.2 Da PI: 10.3135 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6e-12 | 34 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++ ++rW+A+++ k+++lg f+++ +Aa a++ a+++ +g Bobra.0395s0041.1.p 34 SPYRGVSHHRLTQRWEASLWLE-----GKQIYLGGFDSEIDAAHAYDLAALACKG 83 68****************9994.....4**********99**********98765 PP | |||||||
2 | AP2 | 32.1 | 2.8e-10 | 126 | 169 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 s+y+GV+ + ++rW+A++ + +g rk++slg + t+eeAa a+++a Bobra.0395s0041.1.p 126 SRYRGVS-GE-DNRWEARVGAF--RG-RKNVSLGIYSTEEEAAHAYDRA 169 78****8.55.8******5554..33.6*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MARPASQRSN KSNGVGRIKT TSTKVSPQRT SRSSPYRGVS HHRLTQRWEA SLWLEGKQIY 60 LGGFDSEIDA AHAYDLAALA CKGTHVPTNY PAQVYAEQLE AVRDKPKEEV VALVRRNSSA 120 FSRGRSRYRG VSGEDNRWEA RVGAFRGRKN VSLGIYSTEE EAAHAYDRAL IIGKRRQAKT 180 NFPLSVYDEE VNMAILSITS TYGSIHETAG SDFYNTCLLP TSRPTGSEPP SPKGKSSTGR 240 AQKGGRPRNV CPIYILLKDF EIALTVR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 1e-31 | AP2 family protein |