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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0367s0009.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 2108aa MW: 224776 Da PI: 9.3929 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.1e-11 | 226 | 275 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+w +g+W+A+I+ + +lg+f + +Aa a+++a+++ +g Bobra.0367s0009.5.p 226 SIYRGVSWSTCTGKWRAQIWKG-----NDVSHLGYFEDEVKAAIAYDEAALANKG 275 57****************9994.....68889******99**********99876 PP | |||||||
2 | AP2 | 35.3 | 2.9e-11 | 560 | 609 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV+w+k +++W A+I+ + k lg+f+ e+Aa+a++a ++k +g Bobra.0367s0009.5.p 560 SKFKGVSWHKHSQKWYAYIQA------SgKMRGLGYFDDQEDAARAYDAEARKVHG 609 79****************999......449999*******************9998 PP | |||||||
3 | AP2 | 35.5 | 2.6e-11 | 716 | 767 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGV+w+k r W ++I++p +++++ g+f+ + eAa+a+++ ++ +g Bobra.0367s0009.5.p 716 AYKGVSWHKHRRMWQVYIHVPQG--ASRSYHHGYFDDEIEAARAYDREVLRVRG 767 69*******9999*******932..4599999*****99*******98887776 PP | |||||||
4 | AP2 | 22.4 | 3.1e-07 | 1189 | 1234 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaark 51 s ++GV+w k++++W+AeI + +f + e+Aa++ ++a + Bobra.0367s0009.5.p 1189 SSFRGVTWSKQTHKWRAEIEIdG-----CVQFLGSSANE-EDAARMVDRALL 1234 679***************99944.....89988666666.******999875 PP | |||||||
5 | AP2 | 24.5 | 6.7e-08 | 1322 | 1363 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 s+y+GV+w++k ++W++ ++d k+ lg+f + +Aa+a + Bobra.0367s0009.5.p 1322 SKYRGVSWCEKGKKWRSLLWD------GaKQRFLGHFANEVDAARAFD 1363 89*******************......44**********88***9976 PP | |||||||
6 | AP2 | 40.7 | 6.1e-13 | 1679 | 1728 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV+w ++++W+A+++ g +k ++g++ ++e+Aa+a++ a ++l+g Bobra.0367s0009.5.p 1679 SRFKGVSWSDSSNKWRAQCWN----G-SKVQYIGYYESEEDAARAYDTAILQLRG 1728 789***************666....4.7*************************98 PP | |||||||
7 | AP2 | 36.7 | 1.1e-11 | 1778 | 1827 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV+w +++++W+A++++ +k +lg ++ + eAaka+++a +l+g Bobra.0367s0009.5.p 1778 SKYKGVSWSERSHKWRAQLWHD-----NKVRHLGFYDDEVEAAKAYDRAVVELRG 1827 89*****************994.....5999*******99**********99998 PP | |||||||
8 | AP2 | 48.4 | 2.4e-15 | 1884 | 1933 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVrw++++ +W+A+I d +k++slg+++t+e Aaka++ +++l+g Bobra.0367s0009.5.p 1884 SPYRGVRWHERNTKWEARIFDG-----QKQISLGYYDTEEAAAKAYDVRALRLRG 1933 68****************9994.....6***********************9998 PP | |||||||
9 | AP2 | 23.4 | 1.5e-07 | 2024 | 2073 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++d + +W A+ + + g +lg f+++ eAa+a+++ + +++g Bobra.0367s0009.5.p 2024 SLYRGVSYDTGTCKWWAH---FAN-G-AHIRQLGAFDSEVEAAQAHDQEAIRMHG 2073 57****************...843.2.48889******99*************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 2108 aa Download sequence |
METLGADVGA SVKVPVPAPT TPVQPGALPD MGTQVLVSPG LPSTPLPGGP PLPKWPVALS 60 ETPETLKEPG MSKTLQLQYD SPSFVNLPGN APAPMSSTQQ QRGSCTPEVA PEGPQVSHSP 120 SSGMEHTESP GNSHRARPGI LWRESTRKWE AHGFANGRLE LLGCFDTEEA AQQYARHALG 180 YAGGGAMISP PKKPIPRLPG GPLLTVSSSG PRKASRKKGP HSHNSSIYRG VSWSTCTGKW 240 RAQIWKGNDV SHLGYFEDEV KAAIAYDEAA LANKGPGAIT NFCPSSYGYP KPDPTQSKRK 300 QKSGVKRRSP SSNPPFASES SPAPGAFIGG SSAGHPQKPS EDMELEILQG QSRGWGATKS 360 RSHSEETNPQ LAGRLPPTPL GDVTEVSPHV ARRKRTCSRK PSLAGLASHL VHEPAAEEAA 420 EALASMSSGD GETLSPRSSD PEGISGTAGI EEAPIPRLSR LISPFTKRLN SPSSCKESPA 480 GSSPKTGQEP DALLGGRRRS TRISDAHDAF AASLLTGLAC KGDAEPSSRA SPAISEGGGS 540 SRKRGSVGRG TASESAAKSS KFKGVSWHKH SQKWYAYIQA SGKMRGLGYF DDQEDAARAY 600 DAEARKVHGA KAVVNFDLEG NRILRECPSR GRSLPSSAVN SEDMASADES NPGDTPRSRH 660 RPTSLPWGPA PSGVPSRMPG SRPNSSGAAT SVGSEEDPSA WGTRRPPYKK PAAHSAYKGV 720 SWHKHRRMWQ VYIHVPQGAS RSYHHGYFDD EIEAARAYDR EVLRVRGPTT PTNFPLSDYI 780 NADGTFINPA HASSSGKGEA RSRPGSSGKA ASPPPPRGAK GASRRQHADS HFEPIEKPDA 840 LYMLMNAAMS LDAPARESDE ESWREEPPLK KRWRRSGTPR PPAPDQRGRV LGSSQDAGLI 900 HRSASPHSIG PCSATRSSTP PPSQNRLGSS GQILWSPTGA AVTPLIAQAV DLFTSNSPKP 960 VPHTPATAVE IPPRRHPPIK PPPLAEDAHS KGSFPEFAAL MHAAKVFPLS VDERQPMELD 1020 QQGSQGGDPM GADGTMAVQQ PRDNDAAAAL APTPRNDGAE DPGSTEGPQE KETEHMDVDP 1080 QVQNSTAGLT QSGRGHTDVP EIEVSLPGQA KISSYYRSVG SPAWKWDTQG PGRAAARTDA 1140 GSHPRSIRRG SPSWTVSRGL GAVSEASPLG TQSHPEGESC ETGEGKRVSS FRGVTWSKQT 1200 HKWRAEIEID GCVQFLGSSA NEEDAARMVD RALLQHPAYP GRLNHPPAEF QMPLWMKLGT 1260 GLSPDDTRVQ GAGEALGGPP NVKVEPSSGL KDPMDINEGT PKASTPKSGK QPRSPHSPRG 1320 TSKYRGVSWC EKGKKWRSLL WDGAKQRFLG HFANEVDAAR AFDRNSIMLK GKDAAKLNFP 1380 ISDYNLEELA AQFASAPQGP PEAFHPSAEI SQSQSKQTSA SNKQPPVEGP REPQDVATQG 1440 TEQERTAQAP KAQAPVFREQ LMTPVVPPAS PANPFGEQLR REQMHGESPG VPGVGGTLLL 1500 ANTLLSRLDN ASRASPLINP ATCIPSPQEI ETPVQRPRHF AAGGDGLEAQ GSLTPLGDPN 1560 REPQLYCMTP EAQGPPDAGT WRPSRSCSEA SPHEEPGALK EAPDAEPSQA TLAQVMPSPL 1620 EAPQGLVHGS SAPHLGPSLG RQAPKQVGKR SRTPDPSSTV HGPEGRDRVW WPGPGKRSSR 1680 FKGVSWSDSS NKWRAQCWNG SKVQYIGYYE SEEDAARAYD TAILQLRGPL MQTNFPATNY 1740 ESRTNADGQG EGEVENPQGH IGGTGSPGGR SGIQRGTSKY KGVSWSERSH KWRAQLWHDN 1800 KVRHLGFYDD EVEAAKAYDR AVVELRGTSA QTNFPIAGAG GARPLISHAT VTPSQSAGGT 1860 PVPTTEGPIS PPRVRGSPNA KGSSPYRGVR WHERNTKWEA RIFDGQKQIS LGYYDTEEAA 1920 AKAYDVRALR LRGPNTQVNF PQSPVAEPAP PHMHGSDGPG DSARRRRSLS FTPDSPVHTP 1980 PGPGVLGPAD STSPSGWGVR KPRSGVPGLP PRSPIDSSRA PRVSLYRGVS YDTGTCKWWA 2040 HFANGAHIRQ LGAFDSEVEA AQAHDQEAIR MHGSRAVTNF PHPEVQAIKQ PLFGSPVPHS 2100 GAPPAGQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 4e-21 | AP2 family protein |