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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0283s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 773aa MW: 83349.3 Da PI: 10.3623 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.6 | 9.9e-11 | 569 | 618 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslg.kfgtaeeAakaaiaarkkleg 55 +y GV +++k++rW A++r + +++lg ++ t+eeAa+a+++ ++kl+g Bobra.0283s0006.1.p 569 KYLGVGFKPKTQRWYAQLRNG-----KEYYWLGcNYTTPEEAARAYDRLARKLRG 618 899**************9994.....699999989******************99 PP | |||||||
2 | AP2 | 22.6 | 2.6e-07 | 705 | 757 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgr..WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV r+++k+g W A+I + + +lg+f t+e+Aa+a ++ + l+g Bobra.0283s0006.1.p 705 SRYRGVcRFNPKSGPsrWKAQIVC------AgQVKHLGYFATEEDAARAFDRSAVVLRG 757 79*********999677****988......34999****************99988877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 773 aa Download sequence |
MSFIFGNGST PAPTVPLPHP WEPQWPGSMA GFPRLAPIQQ QAYPPNLFTM LLLAGNSSGM 60 GAQLPAFQAD TSPALGTSPW QYCQQIPQAQ QPSLPLLLQI RDALQSVQHL QMRPENQPFR 120 DALPQQSRGA LPQAGPGATG VFLSTLPLSA PSLGWSVADA ASRASMYSRP SPASHMHWDP 180 TSGGLQNKLM GMDLLLEGGR ISNSLASGWQ GGRQHSSLMP SYGNQWDSGA TSFGQAWRPP 240 AFENTAMNGQ FQARPVDSHN LLMGRAASKP SSNFQELFAA VGYFLAANLP VGTMQGVSAS 300 AKVLKGRLLL LMLLCGDRLH SFAGRMLEYA ERKGLLSGNF GAPKATIKVL RPRQPRPGRV 360 KEPKGLRALS RSPAGQAPSQ APKWPVRDIE AKLCADAGNS KGMSSGEARS LKRSSCSANG 420 LLSAASPPAR PSGSRLLESF NSAVPGKWVQ AKQSMHSPGF QAAVPLACRD ADASCSQHEG 480 AAHDGGQQPR RCTANRGSLD PVKYGHEGSG IRTSGCSRPE LHKPLATLLV TAASLLAEDH 540 PSGRRPNPFL KTEERSRSPA ANVQEPRRKY LGVGFKPKTQ RWYAQLRNGK EYYWLGCNYT 600 TPEEAARAYD RLARKLRGPQ TQPVNFPLED DEGPDVAFAH RRGVKRKQMS FCMGKSRDSE 660 GPSSPGSRHA LPFSGDEDYL TSGAMETADS DGQRYVSPSV RRGTSRYRGV CRFNPKSGPS 720 RWKAQIVCAG QVKHLGYFAT EEDAARAFDR SAVVLRGPTA ELNFPLENTG QI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 641 | 647 | RRGVKRK |
2 | 641 | 648 | RRGVKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 3e-12 | AP2 family protein |