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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0201s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 658aa MW: 71914.6 Da PI: 8.6753 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.9 | 1e-12 | 359 | 410 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++grW+A++++ + ++++lg + +e Aa+a++ a +k +g Bobra.0201s0006.1.p 359 SKYRGVTKHRRSGRWEAHVWV----KeLGRQVYLGGYEQEEHAAEAYDVAILKCKG 410 89****************999....3234*********************998766 PP | |||||||
2 | AP2 | 44.9 | 2.8e-14 | 453 | 502 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++ +grW+A+I p g +k+++lg f ++eeAa+ ++aa +l+g Bobra.0201s0006.1.p 453 SSFRGVTRHP-SGRWEARIGIP---G-SKHIYLGLFQSEEEAARSYDAALVRLRG 502 679*******.7*********8...3.6************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence |
MHLLSGNWPL EDESSKNIAD GGTKSGGGVC DDCRHSKRRA RVVGYTYRDT ALSSTWAFYD 60 DTTGVEINAS KQSPLPHLHL RDKESLQQAN RDFVGVNWSM EQKDTRLSSL LSLGPMDSLT 120 DLPQSPFQEE AAAGGDNGYV RASQNMAANQ LQGLVVKGRV RNLDQPFYMP LRGVEIHPQP 180 ALYHPKDFVD EMLSPRQRHF QELNEQLRSR LAFAPGLPDP RASPASLSSG RTTFDSEGAC 240 TPAPLAVTST KNNDTVNEAS QNLEQEALED PLEDSGAIAM TSGAANVRLI KAEKAQPDHI 300 NERRCTASAD LQSKPVFRRP FTRSAGQGGP CRLGVSKGLP QKQQRVVANK AATGKVRSSK 360 YRGVTKHRRS GRWEAHVWVK ELGRQVYLGG YEQEEHAAEA YDVAILKCKG RRVSTNFEIA 420 RYADLLDCMD AISLEELIMA VRRQSQGFAR GTSSFRGVTR HPSGRWEARI GIPGSKHIYL 480 GLFQSEEEAA RSYDAALVRL RGSSAATNFA LSDYTGDLAA YHKMQQSVLG VSLFDSSGAA 540 SDTAILSRIL GVFLKGTASP ILTSGQQKLW CSPRLILQSS AAAKLLDSRG SHFENWIKHG 600 TPPEEGVVVE PAAVVKPSSA RPQRRAAAAR FLLKNEEMAD WDDSGEENEG PATSRRG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-47 | AP2 family protein |