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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0066s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 1261aa MW: 129920 Da PI: 5.7306 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.3 | 5.2e-10 | 90 | 137 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+y+GV+ +k+ grW+A+I +g k+ +lg ++t+ Aa a++a + k Bobra.0066s0052.1.p 90 SQYRGVYKRKRGGRWEASIVI---DG--KNCRLGLHDTEVLAAHAYDAVAIKR 137 78****************766...33..**********99********99876 PP | |||||||
2 | AP2 | 34.9 | 3.8e-11 | 414 | 463 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k++g+Wv++I+ k+++lg + Aa+a+++a+ + g Bobra.0066s0052.1.p 414 SKYRGVSTHKQSGKWVSQIKAG-----GKQIYLGFYKDQLTAAQAYDQAAINVQG 463 89****************9993.....4**********************98766 PP | |||||||
3 | AP2 | 26.1 | 2.2e-08 | 512 | 561 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV dk +++W+A+I g + +++lg + t+ Aa+a+++a ++++g Bobra.0066s0052.1.p 512 SSFRGVAPDK-SKKWRAQITT----GAKHTVYLGLYPTEVAAARAYDRASLAKRG 561 579***9899.7******888....335**********99*********998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1261 aa Download sequence |
MVHTTPTMES LNVPDREGES VLGIPIDRSD GQPAWNHGTL SEQQFQPQVF PGVPSVDLQT 60 FIPGAYQEQV QLPVDCLPEE HHPPVTTKSS QYRGVYKRKR GGRWEASIVI DGKNCRLGLH 120 DTEVLAAHAY DAVAIKRWGV EEAQNKLNFQ SSMYNLAALN QLTLPQVVEV VRGNTARGRK 180 AAQLPPESAA APSAAVAIDE AEPASKPRPL TGQKRSTPDS QPHSRPKDGG LLLTPQTSPV 240 PPAQLRGPDT PLGHPAVPSA ITSTGQAPGG AAQAAPVFCM AGQPLLFPVQ QQSLGSQAPS 300 RAGQPLLALD PNLVWAGPAS TVPGQVQGLG MAGQATTVPG QVQGLGMAGQ ATTLAGQVQG 360 VGLAGQDPRL PDQASGVMKF LMSTAAAPPP PADAASGAAV PCSGGDRVVC KQSSKYRGVS 420 THKQSGKWVS QIKAGGKQIY LGFYKDQLTA AQAYDQAAIN VQGEKAETNF PLVTYSDRWD 480 YLRSISLHEL VLQLKKGPRG PGEIKQIKVP QSSFRGVAPD KSKKWRAQIT TGAKHTVYLG 540 LYPTEVAAAR AYDRASLAKR GVQSKTNFPA EDYAAELDHL TSAPFSDIVK ELRASAQGTG 600 AAEDDLLPAS EYDLFVDQLG LSTSDGPDPP LAVPQGTSLV RNSLEGPLPM PGSHQAYGAA 660 LASGPPAFYH GQPSPTDPGS NPGALGIASG SMISDPQNNP ACHQQGMNVP NYQSLPVAVP 720 HGYPMAAMPP GLLVQVRSPG DPSHCALRGR ALVPSARDAI DPSVRPGGFS GQVAGPGTLP 780 QGTSGVHRAH VPALPCDSFA LGPPAETSSI SSASPALINP LAGAHIHPRA QAPGSAMVSS 840 AMSVQQQAPW LVEGPGDSRF DVDDPCGLAS RDQTPMFHAQ MGGDSYQQFL LPQDCFAPAS 900 GGRLPHQPLD GALPGGAGAG ALTDEALFSA LPGEAVLGVL HEQAGPATTP GQGLQLAMPD 960 QADLRTSPGA VPGPTPTVPM LPGAAAYGGR GTPFGSHEGV APGAETGQPQ TPTAETVSAP 1020 GVAQAHDGAY YTDLVMLGSG GEDTGAGSVK GEAEGPNSEV ALLGYGFAEE LAGACGPARK 1080 LPEVLFPGED PQFCSSPSAP ELLHLNRSER DLPGALLLEE RQGSPLESFR STPGGAAVRS 1140 EERQGSPLVS FRSSPGGAAA RLRERQGSTP TALGGALAAE EQYTSGISPT LPPQPADADA 1200 SGMLLFPGSS SKDDSLPTSP LFNRNPSGSP PLLGVLEGAG MSDSPHLQGS APGKLFLDGA 1260 * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 2e-16 | AP2 family protein |