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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0058s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 164aa MW: 18582.7 Da PI: 7.9499 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 47 | 97 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ ++ +grW+A+I + e g +++ +lg+f+ +e+Aa+a+++a+++++ Bobra.0058s0069.1.p 47 SKYRGVTKHHHQGRWEARIGRV-E-G-NRYLYLGTFDNEEDAARAYDRAALQYR 97 89****************9994.2.2.5***********************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MIFGGAAHAQ FDRAIYQKIE SELQGMQREH VVSSLKRNST GFARGQSKYR GVTKHHHQGR 60 WEARIGRVEG NRYLYLGTFD NEEDAARAYD RAALQYRRDK AVTNFSVSDY LDDTLEPTTF 120 DVETPPDSPG TTKHGKEHPE SAIRPPLIPP LNVIQLTPII FQW* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 4e-29 | ERF family protein |