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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0038s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 244aa MW: 27517.2 Da PI: 10.0525 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24 | 9.5e-08 | 7 | 54 | 1 | 53 |
AP2 1 sgykGVrwdkkrgr.WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +++kGV+ + + g+ W A I + +k+fs+g + ta+eAa + + r kl Bobra.0038s0080.1.p 7 PHFKGVFSRTR-GStWTANIVVQ-----KKSFSIGLHQTADEAAHMLNRVRYKL 54 689***87775.666****9992.....5***************9877776665 PP | |||||||
2 | AP2 | 42.6 | 1.5e-13 | 169 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++++W+A+Ir r ++ lg+f t+e+Aaka+++ +l g Bobra.0038s0080.1.p 169 SEYRGVSFYRSTNKWRAQIRSD-----RVSYCLGYFKTEEQAAKAYDKKLIELGG 218 569******************4.....5********************9988865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MAYLPHPHFK GVFSRTRGST WTANIVVQKK SFSIGLHQTA DEAAHMLNRV RYKLGRKVET 60 PLEENEMNEL DALASWQDAL PKYAHKLMIP VKNKAGYRGV YRASTGRGRW YAQAQINGLK 120 KHLGVFTSKE AAGWAYNQHL LTHGGRVELL NDIDKPPPDF PSTSSEKTSE YRGVSFYRST 180 NKWRAQIRSD RVSYCLGYFK TEEQAAKAYD KKLIELGGSL DKLNFKPADG TLGHLDTDPD 240 QKL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22200.1 | 6e-08 | ERF family protein |